| # | Town | Population (2001) | Population rank | County | Municipality |
| 1 | Adutiškis | 778 | 82 | Vilnius County | Švenčionys district municipality |
| 2 | Akademija, Kaunas | 4,213 | 1 | Kaunas County | Kaunas district municipality |
| 3 | Akademija, Kėdainiai | 873 | 71 | Kaunas County | Kėdainiai district municipality |
| 4 | Alanta | 464 | 157 | Utena County | Molėtai district municipality |
| 5 | Alizava | 450 | 159 | Panevėžys County | Kupiškis district municipality |
| 6 | Alsėdžiai | 956 | 57 | Telšiai County | Plungė district municipality |
| 7 | Andrioniškis | 278 | 203 | Utena County | Anykščiai district municipality |
| 8 | Antalieptė | 359 | 182 | Utena County | Zarasai district municipality |
| 9 | Antašava | 247 | 214 | Panevėžys County | Kupiškis district municipality |
| 10 | Aukštadvaris | 1,031 | 41 | Vilnius County | Trakai district municipality |
| 11 | Babtai | 1,715 | 15 | Kaunas County | Kaunas district municipality |
| 12 | Bagaslaviškis | 185 | 232 | Vilnius County | Širvintos district municipality |
| 13 | Baisogala | 2,548 | 3 | Šiauliai County | Radviliškis district municipality |
| 14 | Balbieriškis | 1,180 | 32 | Kaunas County | Prienai district municipality |
| 15 | Balninkai | 470 | 154 | Utena County | Molėtai district municipality |
| 16 | Barstyčiai | 659 | 108 | Klaipėda County | Skuodas district municipality |
| 17 | Bartninkai | 495 | 145 | Marijampolė County | Vilkaviškis district municipality |
| 18 | Barzdai | 472 | 152 | Marijampolė County | Šakiai district municipality |
| 19 | Batakiai | 261 | 208 | Tauragė County | Tauragė district municipality |
| 20 | Bazilionai | 475 | 150 | Šiauliai County | Šiauliai district municipality |
| 21 | Betygala | 559 | 129 | Kaunas County | Raseiniai district municipality |
| 22 | Bezdonys | 857 | 73 | Vilnius County | Vilnius district municipality |
| 23 | Butrimonys | 1,126 | 35 | Alytus County | Alytus district municipality |
| 24 | Čedasai | 239 | 218 | Panevėžys County | Rokiškis district municipality |
| 25 | Čekiškė | 734 | 90 | Kaunas County | Kaunas district municipality |
| 26 | Darbėnai | 1,598 | 20 | Klaipėda County | Kretinga district municipality |
| 27 | Daugailiai | 351 | 183 | Utena County | Utena district municipality |
| 28 | Daujėnai | 479 | 149 | Panevėžys County | Pasvalys district municipality |
| 29 | Daukšiai | 310 | 192 | Marijampolė County | Marijampolė municipality |
| 30 | Debeikiai | 452 | 158 | Utena County | Anykščiai district municipality |
| 31 | Deltuva | 503 | 143 | Vilnius County | Ukmergė district municipality |
| 32 | Dieveniškės | 916 | 62 | Vilnius County | Šalčininkai district municipality |
| 33 | Dotnuva | 775 | 85 | Kaunas County | Kėdainiai district municipality |
| 34 | Dovilai | 1,231 | 29 | Klaipėda County | Klaipėda district municipality |
| 35 | Dubingiai | 239 | 219 | Utena County | Molėtai district municipality |
| 36 | Duokiškis | 248 | 211 | Panevėžys County | Rokiškis district municipality |
| 37 | Eigirdžiai | 746 | 88 | Telšiai County | Telšiai district municipality |
| 38 | Endriejavas | 718 | 94 | Klaipėda County | Klaipėda district municipality |
| 39 | Eržvilkas | 518 | 139 | Tauragė County | Jurbarkas district municipality |
| 40 | Gadūnavas | 122 | 240 | Telšiai County | Telšiai district municipality |
| 41 | Gardamas | 437 | 163 | Klaipėda County | Šilutė district municipality |
| 42 | Gaurė | 468 | 155 | Tauragė County | Tauragė district municipality |
| 43 | Geležiai | 386 | 174 | Panevėžys County | Panevėžys district municipality |
| 44 | Gelvonai | 380 | 176 | Vilnius County | Širvintos district municipality |
| 45 | Giedraičiai | 778 | 83 | Utena County | Molėtai district municipality |
| 46 | Girkalnis | 997 | 49 | Kaunas County | Raseiniai district municipality |
| 47 | Gražiškiai | 401 | 167 | Marijampolė County | Vilkaviškis district municipality |
| 48 | Grinkiškis | 900 | 65 | Šiauliai County | Radviliškis district municipality |
| 49 | Griškabūdis | 1,024 | 43 | Marijampolė County | Šakiai district municipality |
| 50 | Gruzdžiai | 1,747 | 12 | Šiauliai County | Šiauliai district municipality |
| 51 | Gudeliai | 447 | 160 | Marijampolė County | Marijampolė municipality |
| 52 | Gudžiūnai | 656 | 110 | Kaunas County | Kėdainiai district municipality |
| 53 | Igliškėliai | 334 | 185 | Marijampolė County | Marijampolė municipality |
| 54 | Janapolė | 465 | 156 | Telšiai County | Telšiai district municipality |
| 55 | Jašiūnai | 1,879 | 9 | Vilnius County | Šalčininkai district municipality |
| 56 | Joniškis, Utena | 325 | 187 | Utena County | Molėtai district municipality |
| 57 | Josvainiai | 1,545 | 22 | Kaunas County | Kėdainiai district municipality |
| 58 | Judrėnai | 531 | 132 | Klaipėda County | Klaipėda district municipality |
| 59 | Jūžintai | 491 | 146 | Panevėžys County | Rokiškis district municipality |
| 60 | Kačerginė | 715 | 97 | Kaunas County | Kaunas district municipality |
| 61 | Kairiai | 1,158 | 34 | Šiauliai County | Šiauliai district municipality |
| 62 | Kaltanėnai | 282 | 202 | Vilnius County | Švenčionys district municipality |
| 63 | Kaltinėnai | 835 | 74 | Tauragė County | Šilalė district municipality |
| 64 | Kamajai | 681 | 101 | Panevėžys County | Rokiškis district municipality |
| 65 | Kapčiamiestis | 691 | 99 | Alytus County | Lazdijai district municipality |
| 66 | Karklėnai | 401 | 168 | Šiauliai County | Kelmė district municipality |
| 67 | Karmėlava | 2,886 | 2 | Kaunas County | Kaunas district municipality |
| 68 | Kartena | 1,022 | 44 | Klaipėda County | Kretinga district municipality |
| 69 | Katyčiai | 737 | 89 | Klaipėda County | Šilutė district municipality |
| 70 | Kernavė | 307 | 194 | Vilnius County | Širvintos district municipality |
| 71 | Keturvalakiai | 134 | 237 | Marijampolė County | Vilkaviškis district municipality |
| 72 | Kintai | 833 | 75 | Klaipėda County | Šilutė district municipality |
| 73 | Klovainiai | 980 | 52 | Šiauliai County | Pakruojis district municipality |
| 74 | Krakės | 991 | 51 | Kaunas County | Kėdainiai district municipality |
| 75 | Kražiai | 784 | 80 | Šiauliai County | Kelmė district municipality |
| 76 | Krekenava | 2,003 | 6 | Panevėžys County | Panevėžys district municipality |
| 77 | Kretingalė | 977 | 53 | Klaipėda County | Klaipėda district municipality |
| 78 | Krikliniai | 290 | 199 | Panevėžys County | Pasvalys district municipality |
| 79 | Krinčinas | 527 | 134 | Panevėžys County | Pasvalys district municipality |
| 80 | Kriukai | 602 | 118 | Šiauliai County | Joniškis district municipality |
| 81 | Kriūkai | 371 | 179 | Marijampolė County | Šakiai district municipality |
| 82 | Krokialaukis | 239 | 220 | Alytus County | Alytus district municipality |
| 83 | Krosna | 401 | 169 | Alytus County | Lazdijai district municipality |
| 84 | Kruonis | 726 | 92 | Kaunas County | Kaišiadorys district municipality |
| 85 | Kruopiai | 614 | 114 | Šiauliai County | Akmenė district municipality |
| 86 | Kuktiškės | 485 | 147 | Utena County | Utena district municipality |
| 87 | Kuliai | 704 | 98 | Telšiai County | Plungė district municipality |
| 88 | Kupreliškis | 248 | 212 | Panevėžys County | Biržai district municipality |
| 89 | Kurkliai | 474 | 151 | Utena County | Anykščiai district municipality |
| 90 | Kurtuvėnai | 326 | 186 | Šiauliai County | Šiauliai district municipality |
| 91 | Kužiai | 1,420 | 26 | Šiauliai County | Šiauliai district municipality |
| 92 | Kvėdarna | 1,934 | 7 | Tauragė County | Šilalė district municipality |
| 93 | Labanoras | 75 | 244 | Vilnius County | Švenčionys district municipality |
| 94 | Laižuva | 560 | 128 | Telšiai County | Mažeikiai district municipality |
| 95 | Lapės | 1,038 | 40 | Kaunas County | Kaunas district municipality |
| 96 | Lauko Soda | 177 | 233 | Telšiai County | Telšiai district municipality |
| 97 | Laukuva | 998 | 47 | Tauragė County | Šilalė district municipality |
| 98 | Leckava | 235 | 222 | Telšiai County | Mažeikiai district municipality |
| 99 | Leipalingis | 1,736 | 13 | Alytus County | Skuodas district municipality |
| 100 | Lekėčiai | 1,040 | 39 | Marijampolė County | Druskininkai municipality |
| 101 | Leliūnai | 483 | 148 | Utena County | Šakiai district municipality |
| 102 | Lenkimai | 779 | 81 | Klaipėda County | Utena district municipality |
| 103 | Lioliai | 544 | 130 | Šiauliai County | Kelmė district municipality |
| 104 | Liudvinavas | 1,055 | 37 | Marijampolė County | Marijampolė municipality |
| 105 | Lukšiai | 1,651 | 16 | Marijampolė County | Šakiai district municipality |
| 106 | Luokė | 777 | 84 | Telšiai County | Telšiai district municipality |
| 107 | Lyduokiai | 169 | 234 | Vilnius County | Ukmergė district municipality |
| 108 | Lyduvėnai | 125 | 238 | Kaunas County | Raseiniai district municipality |
| 109 | Lygumai | 664 | 105 | Šiauliai County | Pakruojis district municipality |
| 110 | Maišiagala | 1,634 | 18 | Vilnius County | Vilnius district municipality |
| 111 | Merkinė | 1,434 | 25 | Alytus County | Varėna district municipality |
| 112 | Meškuičiai | 1,218 | 30 | Šiauliai County | Šiauliai district municipality |
| 113 | Mickūnai | 1,415 | 27 | Vilnius County | Vilnius district municipality |
| 114 | Mielagėnai | 286 | 201 | Utena County | Ignalina district municipality |
| 115 | Miežiškiai | 716 | 95 | Panevėžys County | Panevėžys district municipality |
| 116 | Mosėdis | 1,379 | 28 | Klaipėda County | Skuodas district municipality |
| 117 | Musninkai | 472 | 153 | Vilnius County | Širvintos district municipality |
| 118 | Naujamiestis, Panevėžys | 832 | 76 | Panevėžys County | Panevėžys district municipality |
| 119 | Nemakščiai | 905 | 64 | Kaunas County | Raseiniai district municipality |
| 120 | Nemunaitis | 218 | 228 | Alytus County | Alytus district municipality |
| 121 | Nemunėlio Radviliškis | 729 | 91 | Panevėžys County | Biržai district municipality |
| 122 | Nerimdaičiai | 349 | 184 | Telšiai County | Telšiai district municipality |
| 123 | Nevarėnai | 659 | 109 | Telšiai County | Telšiai district municipality |
| 124 | Onuškis | 584 | 123 | Vilnius County | Trakai district municipality |
| 125 | Pabaiskas | 249 | 210 | Vilnius County | Ukmergė district municipality |
| 126 | Pabiržė | 364 | 181 | Panevėžys County | Biržai district municipality |
| 127 | Pagiriai | 523 | 137 | Kaunas County | Kėdainiai district municipality |
| 128 | Pagramantis | 569 | 126 | Tauragė County | Tauragė district municipality |
| 129 | Pajūris | 872 | 72 | Tauragė County | Šilalė district municipality |
| 130 | Pakuonis | 680 | 102 | Kaunas County | Prienai district municipality |
| 131 | Palėvenė | 89 | 243 | Panevėžys County | Kupiškis district municipality |
| 132 | Palonai | 441 | 161 | Šiauliai County | Radviliškis district municipality |
| 133 | Panemunėlis | 287 | 200 | Panevėžys County | Rokiškis district municipality |
| 134 | Panemunis | 308 | 193 | Panevėžys County | Rokiškis district municipality |
| 135 | Panoteriai | 399 | 170 | Kaunas County | Jonava district municipality |
| 136 | Papilė | 1,449 | 24 | Šiauliai County | Akmenė district municipality |
| 137 | Papilys | 312 | 191 | Panevėžys County | Biržai district municipality |
| 138 | Pašilė | 224 | 227 | Šiauliai County | Kelmė district municipality |
| 139 | Pašušvys | 395 | 172 | Šiauliai County | Radviliškis district municipality |
| 140 | Pašvitinys | 440 | 162 | Šiauliai County | Pakruojis district municipality |
| 141 | Pavandenė | 323 | 188 | Telšiai County | Telšiai district municipality |
| 142 | Pernarava | 299 | 196 | Kaunas County | Kėdainiai district municipality |
| 143 | Pikeliai | 520 | 138 | Telšiai County | Mažeikiai district municipality |
| 144 | Pilviškiai | 1,493 | 23 | Marijampolė County | Vilkaviškis district municipality |
| 145 | Plateliai | 1,021 | 45 | Telšiai County | Plungė district municipality |
| 146 | Plikiai | 607 | 117 | Klaipėda County | Klaipėda district municipality |
| 147 | Pociūnėliai | 535 | 131 | Šiauliai County | Radviliškis district municipality |
| 148 | Pumpėnai | 952 | 58 | Panevėžys County | Pasvalys district municipality |
| 149 | Pušalotas | 885 | 67 | Panevėžys County | Pasvalys district municipality |
| 150 | Raguva | 610 | 115 | Panevėžys County | Panevėžys district municipality |
| 151 | Raudonė | 716 | 96 | Tauragė County | Jurbarkas district municipality |
| 152 | Rimšė | 274 | 204 | Utena County | Ignalina district municipality |
| 153 | Rozalimas | 928 | 61 | Šiauliai County | Pakruojis district municipality |
| 154 | Rudamina | 296 | 198 | Alytus County | Lazdijai district municipality |
| 155 | Rukla | 2,374 | 4 | Kaunas County | Jonava district municipality |
| 156 | Rumšiškės | 1,833 | 10 | Kaunas County | Kaišiadorys district municipality |
| 157 | Rusnė | 1,642 | 17 | Klaipėda County | Šilutė district municipality |
| 158 | Šakyna | 425 | 164 | Šiauliai County | Šiauliai district municipality |
| 159 | Salamiestis | 300 | 195 | Panevėžys County | Kupiškis district municipality |
| 160 | Saldutiškis | 389 | 173 | Utena County | Utena district municipality |
| 161 | Saločiai | 913 | 63 | Panevėžys County | Pasvalys district municipality |
| 162 | Salos | 228 | 225 | Panevėžys County | Rokiškis district municipality |
| 163 | Sasnava | 670 | 104 | Marijampolė County | Marijampolė municipality |
| 164 | Šaukėnai | 721 | 93 | Šiauliai County | Kelmė district municipality |
| 165 | Šaukotas | 583 | 124 | Šiauliai County | Radviliškis district municipality |
| 166 | Seirijai | 933 | 60 | Alytus County | Lazdijai district municipality |
| 167 | Semeliškės | 660 | 107 | Vilnius County | Elektrėnai municipality |
| 168 | Senasis Subačius | 194 | 230 | Panevėžys County | Kupiškis district municipality |
| 169 | Seredžius | 749 | 87 | Tauragė County | Jurbarkas district municipality |
| 170 | Šeštokai | 755 | 86 | Alytus County | Lazdijai district municipality |
| 171 | Šešuoliai | 189 | 231 | Vilnius County | Ukmergė district municipality |
| 172 | Šėta | 1,025 | 42 | Kaunas County | Kėdainiai district municipality |
| 173 | Šiaulėnai | 890 | 66 | Šiauliai County | Radviliškis district municipality |
| 174 | Sidabravas | 610 | 116 | Šiauliai County | Radviliškis district municipality |
| 175 | Siesikai | 601 | 120 | Vilnius County | Ukmergė district municipality |
| 176 | Šilai | 298 | 197 | Panevėžys County | Panevėžys district municipality |
| 177 | Šiluva | 800 | 78 | Kaunas County | Raseiniai district municipality |
| 178 | Šimkaičiai | 265 | 207 | Tauragė County | Jurbarkas district municipality |
| 179 | Šimonys | 505 | 141 | Panevėžys County | Kupiškis district municipality |
| 180 | Sintautai | 586 | 122 | Marijampolė County | Šakiai district municipality |
| 181 | Skaistgirys | 964 | 54 | Šiauliai County | Joniškis district municipality |
| 182 | Skapiškis | 496 | 144 | Panevėžys County | Kupiškis district municipality |
| 183 | Skiemonys | 92 | 242 | Utena County | Anykščiai district municipality |
| 184 | Smilgiai | 652 | 111 | Panevėžys County | Panevėžys district municipality |
| 185 | Stakiai | 241 | 217 | Tauragė County | Jurbarkas district municipality |
| 186 | Sudeikiai | 407 | 166 | Utena County | Utena district municipality |
| 187 | Šumskas | 998 | 48 | Vilnius County | Vilnius district municipality |
| 188 | Šunskai | 524 | 135 | Marijampolė County | Marijampolė municipality |
| 189 | Surdegis | 244 | 216 | Utena County | Anykščiai district municipality |
| 190 | Surviliškis | 376 | 178 | Kaunas County | Kėdainiai district municipality |
| 191 | Suvainiškis | 245 | 215 | Panevėžys County | Rokiškis district municipality |
| 192 | Svėdasai | 1,002 | 46 | Utena County | Anykščiai district municipality |
| 193 | Švėkšna | 2,053 | 5 | Klaipėda County | Šilutė district municipality |
| 194 | Šventežeris | 274 | 205 | Alytus County | Lazdijai district municipality |
| 195 | Taujėnai | 322 | 189 | Vilnius County | Ukmergė district municipality |
| 196 | Tauragnai | 602 | 119 | Utena County | Utena district municipality |
| 197 | Teneniai | 369 | 180 | Tauragė County | Šilalė district municipality |
| 198 | Tirkšliai | 1,626 | 19 | Telšiai County | Mažeikiai district municipality |
| 199 | Traupis | 229 | 224 | Utena County | Anykščiai district municipality |
| 200 | Truskava | 137 | 236 | Kaunas County | Kėdainiai district municipality |
| 201 | Tryškiai | 1,555 | 21 | Telšiai County | Telšiai district municipality |
| 202 | Turmantas | 397 | 171 | Utena County | Zarasai district municipality |
| 203 | Tverai | 680 | 103 | Telšiai County | Rietavas municipality |
| 204 | Tverečius | 272 | 206 | Utena County | Ignalina district municipality |
| 205 | Ubiškė | 215 | 229 | Telšiai County | Telšiai district municipality |
| 206 | Upyna | 409 | 165 | Tauragė County | Šilalė district municipality |
| 207 | Užpaliai | 877 | 70 | Utena County | Utena district municipality |
| 208 | Vadaktai | 227 | 226 | Šiauliai County | Radviliškis district municipality |
| 209 | Vadokliai | 651 | 112 | Panevėžys County | Panevėžys district municipality |
| 210 | Vadžgirys | 505 | 142 | Tauragė County | Jurbarkas district municipality |
| 211 | Vainutas | 993 | 50 | Klaipėda County | Šilutė district municipality |
| 212 | Valkininkai | 238 | 221 | Alytus County | Varėna district municipality |
| 213 | Vandžiogala | 946 | 59 | Kaunas County | Kaunas district municipality |
| 214 | Vaškai | 688 | 100 | Panevėžys County | Pasvalys district municipality |
| 215 | Veiveriai | 1,100 | 36 | Kaunas County | Prienai district municipality |
| 216 | Veiviržėnai | 964 | 55 | Klaipėda County | Klaipėda district municipality |
| 217 | Veliuona | 883 | 68 | Tauragė County | Jurbarkas district municipality |
| 218 | Vepriai | 663 | 106 | Vilnius County | Ukmergė district municipality |
| 219 | Vėžaičiai | 1,749 | 11 | Klaipėda County | Klaipėda district municipality |
| 220 | Vidiškiai | 528 | 133 | Vilnius County | Ukmergė district municipality |
| 221 | Viduklė | 1,911 | 8 | Kaunas County | Raseiniai district municipality |
| 222 | Viešintos | 383 | 175 | Utena County | Anykščiai district municipality |
| 223 | Viešvilė | 1,045 | 38 | Tauragė County | Jurbarkas district municipality |
| 224 | Vilkyškiai | 883 | 69 | Tauragė County | Pagėgiai municipality |
| 225 | Vištytis | 566 | 127 | Marijampolė County | Vilkaviškis district municipality |
| 226 | Vyžuonos | 581 | 125 | Utena County | Utena district municipality |
| 227 | Ylakiai | 1,165 | 33 | Klaipėda County | Skuodas district municipality |
| 228 | Žaiginys | 380 | 177 | Kaunas County | Raseiniai district municipality |
| 229 | Žalpiai | 125 | 239 | Šiauliai County | Kelmė district municipality |
| 230 | Zapyškis | 254 | 209 | Kaunas County | Kaunas district municipality |
| 231 | Žarėnai | 588 | 121 | Telšiai County | Telšiai district municipality |
| 232 | Žasliai | 818 | 77 | Kaunas County | Kaišiadorys district municipality |
| 233 | Žeimelis | 1,216 | 31 | Šiauliai County | Pakruojis district municipality |
| 234 | Žeimiai | 962 | 56 | Kaunas County | Jonava district municipality |
| 235 | Želva | 516 | 140 | Vilnius County | Ukmergė district municipality |
| 236 | Žemaičių Kalvarija | 798 | 79 | Telšiai County | Plungė district municipality |
| 237 | Žemaičių Naumiestis | 1,716 | 14 | Klaipėda County | Šilutė district municipality |
| 238 | Žemaitkiemis | 313 | 190 | Vilnius County | Ukmergė district municipality |
| 239 | Žemoji Panemunė | 106 | 241 | Marijampolė County | Šakiai district municipality |
| 240 | Zibalai | 165 | 235 | Vilnius County | Širvintos district municipality |
| 241 | Židikai | 524 | 136 | Telšiai County | Mažeikiai district municipality |
| 242 | Žvingiai | 231 | 223 | Tauragė County | Šilalė district municipality |
| 243 | Žvirgždaičiai | 248 | 213 | Marijampolė County | Šakiai district municipality |
| 244 | Žygaičiai | 643 | 113 | Tauragė County | Tauragė district municipality |